yeah of course we'll help you with the pd stuff. just get your patch started, and when you have specific questions about how to do something in pd, you're welcome to post them here.
i don't know anything about microphones, but i think you'll definitely have to read up and find out how to record tiny sounds without getting too much background noise. first idea that popped into my head was that you might try to find a nice soundproofed box, and then put something insde that box with a good microphone.
i often see on those nature documentaries when they'll have a close up of a caterpillar eating a leaf or something, and the sound is the caterpillar chewing....but i'm not sure if those are actual recordings, or just sound effects added later to the video.
the standard visual part of pd is called GEM. it comes 'pre-installed' in pd-extended, which you shoudl download from here if you don't have it already: http://at.or.at/hans/pd/installers.html
just thinking more about that idea with the box....it would probably be quite easy to make one for yourself. just get an ordinary polystyrene box...like the ones they put fish or vegetables in...and then put a few more layers of old material or foam around it to make it really soundproof.
if you don't do something like that, then your microphone is just going to pick up the ambient sounds of the room, which i don't think is what you want.
the other thing i just thought of is you could use something like a stethoscope..you know..the thing your doctor listens with.
good luck.